Supervisor's name Institution Group Project's Title
Albert Jordan IBMB-CSIC Chromatin regulation of human and viral gene expression Occupancy of histone H1 variants genome-wide and consequences of altering H1 levels on human chromatin organization and gene expression.
Alexandre Perera Lluna Exheus SL Bioinformatics Department Development and validation of predictive models for the analysis of transcriptomic data based on artificial intelligence.
Amelie Baud CRG Amelie Baud Dissecting the genetic basis of handling-induced micturition in BXD recombinant inbred mice
Anthony Mathelier Centre for Molecular Medicine Norway, University of Oslo Computational Biology & Gene Regulation / Mathelier Group PREDICTING MASTER REGULATORS DISCRIMINATING BREAST CANCER SUBTYPES FROM RNA-SEQ DATA
Anthony Mathelier Centre for Molecular Medicine Norway, University of Oslo Computational Biology & Gene Regulation / Mathelier Group PREDICTING EVOLUTIONARY CONSERVED PRIMARY MICRORNA TRANSCRIPTION START SITES ACROSS SPECIES
Anthony Mathelier and Vipin Kumar Centre for Molecular Medicine Norway, University of Oslo Computational Biology & Gene Regulation / Mathelier group Identification of positively selected breast cancer somatic variants in 3D
Antonio Julià Vall Hebron Institut de Recerca Grup de Recerca en Reumatologia Single-cell RNA-seq study of Juvenile Idiopathic Arthritis
Arnau Sebe-Pedros Centre for Genomic Regulation (CRG) Single-cell genomics and evolution Investigating animal cell type diversity, evolution and regulation using single cell genomics and epigenomics approaches
Biola M. Javierre Josep Carreras Leukaemia Research Institute 3D Chromatin Organization Deciphering the role and regulation of spatial-temporal genome architecture in B cells and diffuse large B cell lymphomas
Bolognesi Benedetta IBEC Phase Transitions in Health and Disease Mapping Amyloid Nucleation by Deep Mutagenesis
Camille Lassale IMIM Cardiovascular Epidemiology and Genetics (PI: Roberto Elosua) Diet quality, DNA methylation and transcriptomics: an integrated translational approach
Chaysavanh Manichanh FUNDACIO HOSPITAL UNIVERSITARI VALL D'HEBRON - INSTITUT DERECERCA Microbiome Lab Development of bioinformatics and statistical tools to integrate meta-omics data to decipher the human microbiome
David Comas UPF Human Genome Diversity Analysis of the human genome diversity: unravelling demographic and genomic processes
Donate Weghorn Centre for Genomic Regulation (CRG) Evolutionary Processes Modeling Selection on cancer genomes exerted by the immune system
Eulàlia de Nadal IRB Barcelona Cell Signaling Unraveling the intrinsic determinants of dynamic gene expression variability
Geòrgia Escaramís Dpt. Ciències Biomèdiques, Universitat de Barcelona Genòmica Funcional de Malalties Neurodegeneratives Small-RNAs in neurodegenerative diseases: identification of deregulated species as potential biomarkers and therapeutic targets
Geòrgia Escaramís Dpt. Ciències Biomèdiques, Universitat de Barcelona Genòmica Funcional de Malalties Neurodegeneratives Exploring the small transcriptome (sRNAs) in neurodegenerative diseases
Iñaki Martin-Subero IDIBAPS Biomedical Epigenomics Dissecting the single cell chromatin architecture of normal and neoplastic B-cells.
Javier del Campo Institut de Biologia Evolutiva (CSIC-UPF) del Campo Lab. Microbial Ecology and Evolution. The Microeukaryotic Virome
Javier del Campo Institut de Biologia Evolutiva (CSIC-UPF) del Campo Lab. Microbial Ecology and Evolution A Ribosomal Operon Reference Database
Javier del Campo Institut de Biologia Evolutiva (CSIC-UPF) del Campo Lab. Microbial Ecology and Evolution The genomic mechanisms of ichthyocarbonates precipitaion
Jose A. Seoane Vall d'Hebron Institute of Oncology (VHIO) Cancer Computational Biology Epigenetic role in aromatase inhibitor resistant breast cancer
Josefa Gonzalez IBE (CSIC-UPF) Evolutionary and Functional Genomics Discovering new targets for malaria vector control strategies in urban settings
Josep F. Abril Universitat de Barcelona Computational Genomics Lab Improving planarian interaction network with transcriptomes meta-analysis
Josep F. Abril Universitat de Barcelona Computational Genomics Lab SARS-CoV-2 genomic analyses from metagenomic samples
Julio Rozas Universitat de Barcelona Evolutionary Genomics & Bioinformatics Comparative and evolutionary analysis of multi-gene families in spider genomes
Lorenzo Pasquali UPF Endocrine Regulatory Genomics Genetics and regulatory genomics of glucose metabolism diseases
Luis A Pérez Jurado & Carlos Ruiz Arenas UPF Genetics Unit Combination of common and rare genetic variants to improve the diagnosis of complex disease
Mar Albà Hospital del Mar Medical Research Institute (IMIM) Genòmica Evolutiva Identification of novel classes of neoantigens in cancer
Mar Albà Hospital del Mar Medical Research Institute (IMIM) Evolutionary Genomics Using Nanopore RNA sequencing to explore the transcriptome
Marco Mariotti Universitat de Barcelona Comparative Genomics and Recoding lab Computational genomics of proteins containing the special amino acid selenocysteine
Maria José Aranzana IRTA-CRAG Plant Genetics and Genomics Machine learning methods in plant genomics
Mario Cáceres Institut de Biotecnologia i de Biomedicina (IBB), UAB Comparative and Functional Genomics Group Functional and evolutionary impact of polymorphic inversions in the human genome
María Soler Vall d'Hebron Research Institute (VHIR) Psychiatry, Mental Health and Addiction Polygenic and trasncriptomic risk score analyses in a sample of school children: assessing the effect of the genetic background of neurodevelopmental disorders on school performance
Michael Tress CNIO Biocomputing Group Anotación de los genomas de humano y ratón
Núria López-Bigas IRB Barcelona Biomedical Genomics Group Understanding cancer biology
Olivia Belbin IIB-SantPau Neurobiology of Dementias A multimodal study to determine the polygenic risk for cognitive, structural and functional brain changes in Alzheimer's disease patients.
Ramiro Logares Institute of Marine Sciences (CSIC) log-lab and Ecology of Marine Microbes The ocean microbiome: population dynamics and evolution in a changing planet
Ramon Massana Institut de Ciències del Mar, CSIC Ecology and Genomics of Marine Microbes Unraveling the diversity and genomic data of marine microbial predators
Robert Castelo & Irene Madrigal Universitat Pompeu Fabra / Hospital Clínic Functional Genomics / Molecular Genetics Deciphering genetics of hereditary hemorrhagic telangiectasia
Roderic Guigó Center for Genomic Regulation Bioinformatics and Genomics Efficient gene annotation across the entire phylogenetic spectrum
Rory Johnson University College Dublin Laboratory for Genomics of Long Noncoding RNAs in Disease Computational genomics of CRISPR-Cas, noncoding RNAs and cancer
Silvia G. Acinas & Pablo Sanchez Institute of Marine Science (ICM) CSIC Ecology and Genomics of Marine Microbes Revealing active prokaryotic genomes from the global Deep Ocean microbiome.
Silvia G. Acinas & Felipe Hernandes Coutinho Institute of Marine Sciences (ICM), CSIC Ecology and Genomics of Marine Microbes Revealing novel viruses among sentinel polar prokaryotes by single cell genome analyses
marta melé Barcelona Supercomputing Center transcriptomics and functional genomics lab Understanding human individual variation in splicing

 

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Supervisor's name Institution Group Project's Title
Alfonso Valencia, Davide Cirillo & Jon Sánchez Barcelona Supercomputing Center Computational Biology Graph-based approaches for the study of drug interactions in comorbidity relations
Alfonso Valencia, Davide Cirillo & Jon Sánchez Barcelona Supercomputing Center Computational Biology Generation of age- and gender-dependent temporal disease trajectories from the Catalan population
Ana I. Caño-Delgado CRAG (Centre for Research in Agricultural Genomics) Brassinosteroid signaling in plant development Development and implementation of bioinformatic tools for the functional analysis of plant adaptation to climate change
Anaïs Baudot Marseille Medical Genetics Network and Systems Biology for Diseases Defining the molecular landscape of premature aging disease through biological networks
Andrés Ozaita UPF Laboratory of Neuropharmacology Intellectual disability can be caused by genetic mutations
Arnau Montagud, Miguel Ponce de León, Alfonso Valencia Barcelona Supercomputing Center (BSC) Computational Biology Use of data-tailored multiscale models to study drug transport
BEJANIN Alexandre Research Institute of the Hospital de la Santa Creu i Sant Pau Sant Pau Memory Unit Neuroimaging of vascular disease in sporadic and genetic Alzheimer’s disease
Josep Vilardell ICREA / IBMB RNA Splicing A Genomics Perspective of pre-mRNA Splicing
Josep Vilardell ICREA / IBMB pre-mRNA splicing Splicing Systems Biology
Julio Alonso Padilla Instituto de Salud Global de Barcelona Iniciativa Chagas Image analysis for setting up an anti-Trypanosoma cruzi biological assay
Marta Mele Barcelona Supercomputing Center Transcriptomics and Functional Genomics Lab Unraveling the role of long non-coding RNAs in response to Ebola infection
Marta Melé Barcelona Supercomputing Center Transcriptomics and Functional Genomics Lab Single-cell transcriptomic analysis across individuals
Mireia Valles-Colomer CIBIO (University of Trento) Segata Lab The neuroactive potential of the underexplored fraction of the human microbiome and its association with health and disease
Pia Cosma CRG Reprogramming and Regeneration Identification of master regulators of reprogramming

 

 

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Supervisor's name Institution Group Project's Title
Patrick Aloy Institute for Research in Biomedicine (IRB Barcelona) Structural Bioinformatics & Network Biology Formatting Biological Big Data to Enable Systems Pharmacology
 

 

Supervisor's name Institution Group Project's Title
Baldo Oliva UPF SBI Protein Folding ab initio, based on contact maps and supersecondary structures using distance-restraints derived from multiple sequence alignments.
Baldo Oliva UPF SBI Proposal to score protein structures using distance-restraints derived from multiple sequence alignments and statistic potentials.
Baldo Oliva UPF SBI TF-DNA Binding strength affected by mutations on DNA binding site
Baldo Oliva UPF SBI TF-DNA Binding strength affected by methylations
Carolina Estarellas Universitat de Barcelona Computational Biology, Chemistry & gastronomy Exploring the molecular basis of the selective activation of specific AMPK isoforms by direct activators
Chiara Pallara NOSTRUM BIODISCOVERY Drug Discovery Frag-AA
Chiara Pallara NOSTRUM BIODISCOVERY Drug Discovery In silico rational discovery of novel molecular glue degraders
Horacio Pérez-Sánchez Universidad Católica de Murcia (UCAM) Structural Bioinformatics and High Performance Computing Research Group Improvement and application of the blind docking technique
Jana Selent IMIM-UPF GPCR Drug Discovery Lab Why is water essential for GPCR functionality?
Jana Selent IMIM-UPF GPCR Drug Discovery Lab Simulation meets experiment: refinement of cryo-EM GPCR structures using molecular dynamics
Jana Selent IMIM-UPF GPCR Drug Discovery Lab Detection of novel druggable binding sites at G protein-coupled receptors
Jana Selent IMIM-UPF GPCR Drug Discovery Group Unraveling signaling bias at G protein-coupled receptors (GPCRs)
Javier Iglesias NOSTRUM BIODISCOVERY Nucleic Acids Development of strategy for finding RNA ligands
Jordi Juárez University of Barcelona Computational Biology and Drug Design Group (CBDD) Molecular Basis of Cooperativity in Protein-Ligand-Protein complexes
Lucía Díaz NOSTRUM BIODISCOVERY Drug Discovery RNA-PROTACs
Martí Municoy NOSTRUM BIODISCOVERY Software Development Development and testing a protocol for protein-peptide binding using PELE and BCE
Martí Municoy NOSTRUM BIODISCOVERY Software Development Development and validation of a ligand docking workflow for PELE
Oriol Gallego UPF Live-cell structural biology Integrative approaches to resolve protein structures in vivo
Salomé Llabrés Universitat de Barcelona CBCG Molecular mechanisms underpinning active drug efflux in Gram-negative bacteria
Toni Giorgino National Research Council of Italy www.giorginolab.it Computational elucidation of large-scale activation dynamics in a multi domain protein
Victor Guallar Barcelona Supercomputing Center EAPM CovPELE
Xavier Barril Universitat de Barcelona Computational Biology and Drug Discovery Enhanced Sampling Molecular Dynamics for Virtual Screening Applications

 

 

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Supervisor's name Institution Group Project's Title
Concepción Padilla Sant Pau Hospital Alzheimer Down Unit "Stretching out the boundaries of the neuropsychological evaluation of dementia in Down's syndrome: a smartphone application for the evaluation of Alzheimer's disease in Down's syndrome".
Gianni De Fabritiis (UPF& Acellera) Company: Acellera Labs Acellera Labs Machine learning in computational structural biology and drug discovery
Gianni De Fabritiis (UPF&Acellera) Company: Acellera Labs Company: Acellera Labs Development of frontend capabilities and graphic user interface (GUI) for PlayMolecule.org
Javier del Campo Institut de Biologia evolutiva (CSIC-UPF) del Campo Lab. Microbial Ecology and Evolution Shiny Tree
Lauro Sumoy Institut Germans Trias i Pujol (IGTP) High Content Genomics and Bioinformatics (HCGB) Development of new modules in NGS analysis pipelines
Marc Güell UPF Translational Synthetic Biology Computational approaches for precise engineering of human genomes
Marco Mariotti Universitat de Barcelona Comparative Genomics and Recoding lab Building Treedex, an interactive framework for visualization and analysis of ‘omics data from multiple species
Osnat Hakimi UIC/BSC DEBBIE research group Information extraction from biomaterials text using machine learning
Salvador Capella Gutierrez Barcelona Supercomputing Center (BSC) INB Coordination Node Uplifting trimAl for handling thousands of sequences
Santiago Marco IBEC Signal and Information Processing for Sensing Systems Comparison of workflows for the analysis of LCMS data in R

 

 

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** You can find all the projects in a unique document in the next LINK