We develop a large number of software tools and hosting infrastructures to support the research developed at the Department. We will be detailing in this section the different tools available. You can take a look for the moment at the offer available within the UPF Knowledge Portal, the innovations created in the context of EU projects in the Innovation Radar and the software sections of some of our research groups:

 

 Artificial Intelligence

 Nonlinear Time Series Analysis

 Web Research 

 

 Music Technology

 Interactive  Technologies

 Barcelona MedTech

 Natural Language  Processing

 Nonlinear Time Series  Analysis

UbicaLab

Wireless Networking

Educational Technologies

GitHub

 

 

Back [BIOIMAGE] 2D bright field Fission yeast cell images with ground truth annotations

2D bright field Fission yeast cell images with ground truth annotations. Chong Zhang.

Original images are from http://www-bcf.usc.edu/~forsburg/pombeX.html. This software is associated with the publication "PombeX: robust cell segmentation for fission yeast transillumination images", PLoS One 2013. (doi: 10.1371/journal.pone.0081434)

Here, we provide the ground truth labels of: cell centers and segmentation, which are used in the publications:

  • "Learning to Segment: Training Hierarchical Segmentation under a Topological Loss", MICCAI 2015. (DOI: 10.1007/978-3-319-24574-4_32)
  • "Hierarchical Planar Correlation Clustering for Cell Segmentation", EMMCVPR 2015. (DOI: 10.1007/978-3-319-14612-6_36)
  • "Cell Detection and Segmentation Using Correlation Clustering", MICCAI 2014. (DOI: 10.1007/978-3-319-10404-1_2)

Link: https://zenodo.org/record/344880

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