List of results published directly linked with the projects co-funded by the Spanish Ministry of Economy and Competitiveness under the María de Maeztu Units of Excellence Program (MDM-2015-0502).

List of publications acknowledging the funding in Scopus.

The record for each publication will include access to postprints (following the Open Access policy of the program), as well as datasets and software used. Ongoing work with UPF Library and Informatics will improve the interface and automation of the retrieval of this information soon.

The MdM Strategic Research Program has its own community in Zenodo for material available in this repository   as well as at the UPF e-repository   

 

 

Back [BIOIMAGE] 2D bright field Fission yeast cell images with ground truth annotations

2D bright field Fission yeast cell images with ground truth annotations. Chong Zhang.

Original images are from http://www-bcf.usc.edu/~forsburg/pombeX.html. This software is associated with the publication "PombeX: robust cell segmentation for fission yeast transillumination images", PLoS One 2013. (doi: 10.1371/journal.pone.0081434)

Here, we provide the ground truth labels of: cell centers and segmentation, which are used in the publications:

  • "Learning to Segment: Training Hierarchical Segmentation under a Topological Loss", MICCAI 2015. (DOI: 10.1007/978-3-319-24574-4_32)
  • "Hierarchical Planar Correlation Clustering for Cell Segmentation", EMMCVPR 2015. (DOI: 10.1007/978-3-319-14612-6_36)
  • "Cell Detection and Segmentation Using Correlation Clustering", MICCAI 2014. (DOI: 10.1007/978-3-319-10404-1_2)

Link: https://zenodo.org/record/344880

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