Journal articles (Google scholar link)

Skin microbiome transplantation and manipulation: Current state of the art 
Chris Callewaert, Nastassia Knödlseder, Ante Karoglan, Marc Güell, Bernhard Paetzold
Computational and Structural Biotechnology Journal 2021 

Extesive germline genome engineering in pigs 
Yanan Yue, …, Marc Güell, ..., George M. Church, Luhan Yang
Nature Biomedical Engineering 2020 

Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
Cory J. Smith, Oscar Castanon, …, Marc Güell, Shilpa Garg, Alex Ng, Hannu Myllykallio, George M. Church
Nucleic Acids Research 2020 gkaa239

Safety and Efficacy of Topically Applied Selected Cutibacterium acnes Strains over Five Weeks in Patients with Acne Vulgaris: An Open-label, Pilot Study
Ante Karoglan, Bernhard Paetzold, Joao Pereira De Lima, Holger Brüggemann, Thomas Tüting, Denny Schanze, Marc Güell,  Harald Gollnick
Acta Dermato-Venereologica 2019 99(13):1253-1257

Technological challenges and milestones for writing genomes
Nili Ostrov, Jacob Beal, Tom Ellis, D. Benjamin Gordon, Bogumil J. Karas, Henry H. Lee, Scott C. Lenaghan, Jeffery A. Schloss, Giovanni Stracquadanio, Axel Trefzer, Joel S. Bader, George M. Church, Cintia M. Coelho, J. William Efcavitch, Marc Güell, Leslie A. Mitchell, Alec A. K. Nielsen, Bill Peck, Alexander C. Smith, C. Neal Stewart Jr., Hille Tekotte
Science 2019 366(6463):310-312

Bad is not always bad
Nastassia Knödlseder
Nature - Microbiology Blog

Gene editing in translational research
Marc Güell
Revista de Bioética y derecho 2019 Vol 47

Skin microbiome modulation induced by probiotic solutions
Bernhard Pätzold, Jesse R. Willis, Joao Lima, Nastassia Knödlseder, Holger Brüggemann, Sven R. Quist, Toni Gabaldón, Marc Güell
Microbiome 2019 7:95

Eradication of porcine endogenous retrovirus activity in pigs using CRISPR-Cas9
Niu et al.,…, Marc Güell*, George Church*, Luhan Yang* (*equally contributing)
Science 2017 357(6357):1303-1307

PERV inactivation is necessary to guarantee absence of pig‐to‐patient PERVs transmission in xenotransplantation
Güell et al. 
Xenotransplantation 2017 24(6)

Heterologous erythromycin production across strain and plasmid construction
L Fang, M Guell, GM Church, BA Pfeifer
Biotechnology progress 2017 34(1):271-276

Making Space in the E. coli Genetic Code
Nili Ostrov, Matthieu Landon, Marc Güell, Gleb Kuznetsov.
Cell Systems 2016 3(3):211:13

Design, test of a 57-codon genome
Nili Ostrov*, Matthieu Landon*, Marc Güell* et al. (*equally contributing).
Science 2016 353(6301):819:22 

Genome-wide inactivation of porcine endogenous retroviruses (PERVs) 
Luhan Yang*, Marc Güell* et al. (*equally contributing) 
Science 2015 350(6264):1101-1104 
 
Genome Editing Assessment using CRISPR Genome Analyzer (CRISPR-GA) 
Güell, Marc; Yang, Luhan; Church, George 
Bioinformatics 2014 30(20):2968-2970
 
Optimization of Scarless Human Cell Genome Editing
Yang, Luhan; Güell, Marc; Byrne, Susan; Yang, Joyce; Mali, Prashant; Los Angeles, Alejandro; Aach, John; Kim-Kiselak, Caroline; Briggs, Adrian; Rios, Xavier; Huang, Poyi; Daley, George; Church, George
Nucleic Acids Research  2013
 
RNA-guided human genome engineering via Cas9
Mali P, Yang L, Esvelt KM, Aach J, Güell M, DiCarlo JE, Norville J, Church GM  
Science  2013 15:339(6121):823-6

Transcription start site RNAs (tssRNAs) in bacteria
Eva Yus*, Marc Güell*, Ana P. Vivancos, Wei-Hua Chen, María Lluch-Senar, Javier Delgado, Anne Claude Gavin, Peer Bork, and Luis Serrano (*equally contributing) 
Molecular Systems Biology 2012 22(8):585

Bacterial transcriptomics: what is beyond the RNA horizOME?
Marc Güell*, Eva Yus*, Maria Lluch-Senar and Luis Serrano (*equally contributing)
Nature Reviews Microbiology 2011 9(9):658-69
 
Quantification of mRNA and protein and integration with protein turnover in a bacterium
Tobias Maier, Alexander Schmidt, Marc Güell, Sebastian Kühner, Anne-Claude Gavin, Ruedi Aebersold, Luis Serrano.
Molecular Systems Biology 2011 7:511
 
Strand-specific deep sequencing of the transcriptome
Ana P. Vivancos*, Marc Güell*, Juliane C. Dohm*, Luis Serrano and Heinz Himmelbauer. (* equally contributing)
Genome Research 2010 20(7):989-99
 
Correlation of mRNA and protein in complex biological samples.
Maier T, Güell M, Serrano L.
FEBS Lett. 2009 583(24):3966-73
 
Transcriptome Complexity in a Genome-Reduced Bacterium
Marc Güell, Vera van Noort, Eva Yus, Wei-Hua Chen, Justine Leigh-Bell, Konstantinos Michalodimitrakis, Takuji Yamada, Manimozhiyan Arumugam, Tobias Doerks, Sebastian Kühner, Michaela Rode, Mikita Suyama, Sabine Schmidt, Anne-Claude Gavin, Peer Bork, and Luis Serrano
Science 27 2009: 1268-1271 
 
Impact of Genome Reduction on Bacterial Metabolism and Its Regulation 
Eva Yus, Tobias Maier, Konstantinos Michalodimitrakis, Vera van Noort, Takuji Yamada, Wei-Hua Chen, Judith A. H. Wodke, Marc Güell, Sira Martínez, Ronan Bourgeois, Sebastian Kühner, Emanuele Raineri, Ivica Letunic, Olga V. Kalinina, Michaela Rode, Richard Herrmann, Ricardo Gutiérrez-Gallego, Robert B. Russell, Anne-Claude Gavin, Peer Bork, and Luis Serrano
Science 27 2009: 1263-1268

Proteome Organization in a Genome-Reduced Bacterium
Sebastian Kühner, Vera van Noort, Matthew J. Betts, Alejandra Leo-Macias, Claire Batisse, Michaela Rode, Takuji Yamada, Tobias Maier, Samuel Bader, Pedro Beltran-Alvarez, Daniel Castaño-Diez, Wei-Hua Chen, Damien Devos, Marc Güell, Tomas Norambuena, Ines Racke, Vladimir Rybin, Alexander Schmidt, Eva Yus, Ruedi Aebersold, Richard Herrmann, Bettina Böttcher, Achilleas S. Frangakis, Robert B. Russell, Luis Serrano, Peer Bork, and Anne-Claude Gavin
Science 27 2009: 1235-1240 

Patents:

George Church, Luhan Yang, Marc Güell Multiplexed Genome Editing - US Patent App. 16/531,351

Luhan Yang, George Church, Marc Güell, Joyce Yang Genome engineering - US Patent App. 14/319,380 

George Church, Luhan Yang, Marc Güell Genome-wide inactivation of PERVs - US Patent App. 62/239,239

Bernhard Paetzold, Veronika Oudova, Marc Güell Methods and compositions for changing the composition of the skin microbiome using complex mixtures of bacterial strains - US Patent App. 62/216,258

Jameson Rogers, Marc Güell, George Church Cell Free Biosensing Systems for Enzyme Discovery and Optimization - US Patent App. 62/305,586

Book chapters:

Genome-Wide PERV Inactivation in Pigs Using CRISPR/cas9
M Güell 
Methods In Molecular Biology - Book: Xenotransplantation, 978-1-07-160255-3 

Conjugative Assembly Genome Engineering (CAGE)
M Güell 
Methods In Molecular Biology - Book: Horizontal gene transfer, 978-1-4939-9876-0 

CRISPR-gRNA design
M Pallarès, N Knödlseder, M Güell 
Methods In Molecular Biology - Book: CRISPR Gene Editing (DOI: 10.1007/978-1-4939-9170-9_1)

CRISPR in Animals and Animal Models
E Shrock, M Güell 
Progress in molecular biology and translational science 152, 95-114