Personal profile in our Scientific Output Portal (PPC)  

Biography note

PhD in Biology. Universitat Pompeu Fabra. January 2007.

Postdoctoral researcher at UW (seattle, WA) under supervision of Dr. Evan Eichler supported by IOF Marie Curie fellowship.

EMBO Young Investigator Award 2013.

Publications

2013

• Daniel Rico, Alfonso Valencia, David Juan, Tomas Marques-Bonet, and Óscar Fernández-Capetillo. "Late-replicating CNVs as a source of new genes". Biology Open 2013 (In Press).
• Byrappa Venkatesh, Alison P. Lee, Vydianathan Ravi, Michelle M. Lian, Ashish K. Maurya, Jeremy B. Swann, Yuko Ohta, Martin F. Flajnik, Yoichi Sutoh, Masanori Kasahara, Shawn Hoon, Vamshidhar Gangu, Scott W. Roy, Manuel Irimia, Vladimir Korzh, Igor Kondrychyn, Boon-Hui Tay, Sumanty Tohari, Zhi Wei Lim1, Kiat Whye Kong, Shufen Ho, Belen Lorente-Galdos, Javier Quilez, Tomas Marques-Bonet, Brian J. Raney, Philip W. Ingham, Alice Tay, LaDeana W. Hillier, Patrick Minx, Thomas Boehm, Richard K. Wilson, Sydney Brenner & Wesley C. Warren. "The elephant shark genome provides unique insights into gnathostome evolution". Nature 2013 (In Press).
• Adam H. Freedman, Rena M. Schweizer, Ilan Gronau, Eunjung Han, Diego Ortega-Del Vecchyo, Pedro Silva, Marco Galaverni, Zhenxin Fan, Peter Marx, Belen Lorente-Galdos, Holly Beale, Oscar Ramirez, Farhad Hormozdiari, Can Alkan, Carles Vilà, Kevin Squire, Eli Geffen, Josip Kusak, Adam R. Boyko, Heidi Parker, Clarence Lee, Vasisht Tadigotla, Adam Siepel, Carlos Bustamante, Timothy Harkins, Stanley F. Nelson, Elaine A. Ostrander, Tomas Marques-Bonet, Robert K. Wayne, John Novembre. "Genome Sequencing Highlights Genes Under Selection and the Dynamic Early History of Dogs."Plos Genetics 2013 (In Press)
• Irene Hernando-Herraez, Javier Prado-Martinez, Paras Garg, Marcos Fernandez-Callejo, Holger Heyn, Christina Hvilsom, Arcadi Navarro, Manel Esteller, Andrew J. Sharp, Tomas Marques-Bonet "Dynamics of DNA Methylation in Recent Human and Great Apes Evolution"  Plos Genetics 2013 Sep;9(9):e1003763. doi: 10.1371/journal.pgen.1003763. Epub 2013 Sep 5.. 
• Holger Heyn, Sebastian Moran, Irene Hernando-Herraez, Sergi Sayols, Antonio Gomez, Juan Sandoval, Dave Monk, Kazuhiko Nakabayashi,  Tomas Marques Bonet, Liewei Wang and Manel Esteller. "DNA methylation contributes to natural human variation". Genome Research 2013 Sep;23(9):1363-72. doi: 10.1101/gr.154187.112. Epub 2013 Aug 1.
• Javier Prado-Martinez*, Peter H. Sudmant*, Jeffrey M. Kidd, Heng Li, Joanna L. Kelley, Belen LorenteGaldos, Krishna R. Veeramah, August Woerner, Timothy D. O'Connor, Gabriel Santpere, Alexander Cagan, Christoph Theunert, Ferran Casals, Hafid Laayouni, Kasper Munch, Asger Hobolth, Anders E. Halager, Maika Malig, Jessica Hernandez-Rodriguez, Irene Hernando-Herraez, Kay Prüfer, Marc Pybus, Laurel Johnstone, Michael Lachmann, Can Alkan, Dorina Twigg, Natalia Petit, Carl Baker, Fereydoun Hormozdiari, Marcos Fernandez-Callejo, Marc Dabad, Michael L. Wilson, Laurie Stevison, Cristina Camprubí, Tiago Carvalho, Aurora Ruiz-Herrera, Laura Vives, Marta Mele, Teresa Abello, Ivanela Kondova, Ronald E. Bontrop, Anne Pusey, Felix Lankester, John A. Kiyang, Richard A. Berg, Elizabeth Lonsdorf, Simon Myers, Mario Ventura, Pascal Gagneux, David Comas, Hans Siegismund, Julie Blanc,Lidia Agueda-Calpena, Marta Gut, Lucinda Fulton, Sarah A. Tishkoff, James C. Mullikin, Richard K. Wilson, Ivo G. Gut, Mary Katherine Gonder, Oliver A. Ryder, Beatrice H. Hahn, Arcadi Navarro, Joshua M. Akey, Jaume Bertranpetit, David Reich, Thomas Mailund, Mikkel H. Schierup, Christina Hvilsom, Aida M. Andrés, Jeff Wall, Carlos D. Bustamante, Mike Hammer, Evan E. Eichler+, Tomas MarquesBonet+. (2013). "Great ape genetic diversity and population history."  Nature 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.
• Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C; Great Ape Genome Project, Marques-Bonet T, Ventura M, Batzer MA, Eichler EE. "Rates and patterns of great ape retrotransposition."  Proc Natl Acad Sci U S A. 2013  Aug 13;110(33):13457-62. doi: 10.1073/pnas.1310914110. Epub 2013 Jul 24.
• Sudmant PH, Huddleston J, Catacchio CR, Malig M, Hillier LW, Baker C, Mohajeri K, Kondova I, Bontrop RE, Persengiev S, Antonacci F, Ventura M, Prado-Martinez J; Great Ape Genome Project, Marques-Bonet T, Eichler EE. "Evolution and diversity of copy number variation in the great ape lineage."  Genome Res. 2013  Sep;23(9):1373-82. doi: 10.1101/gr.158543.113. Epub 2013 Jul 3.
• Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, de la Calle-Mustienes E, Casillas S, Rubio-Acero R, Melé M, Engelken J, Caceres M, Gomez-Skarmeta JL, Gut M, Bertranpetit J, Gut IG, Abello T, Eichler EE, Mingarro I, Lalueza-Fox C, Navarro A, Marques-Bonet T. "The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild."  BMC Genomics. 2013 May 31;14:363. doi: 10.1186/1471-2164-14-363.
• Lorente-Galdos B, Bleyhl J, Santpere G, Vives L, Ramirez O, Hernandez J, Anglada R, Cooper GM, Navarro A, Eichler EE, Marques-Bonet T. "Accelerated exon evolution within primate segmental duplications."
• Giannuzzi G, Siswara P, Malig M, Marques-Bonet T; NISC Comparative Sequencing Program, Mullikin JC, Ventura M, Eichler EE. "Evolutionary dynamism of the primate LRRC37 gene family."  Genome Res. 2013 Jan;23(1):46-59. doi: 10.1101/gr.138842.112. Epub 2012 Oct 11.

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