Projects 2012-2013

Supervisor  Research Centre/ Company  Project Title 
Alfons Nonell Mind the Byte SL Hurakan: A cloud-based virtual screening webservice
Baldo Oliva Research Group on Biomedical Informatics GRIB (IMIM-UPF) Direct-coupling analysis for prediction of protein-protein interaction surface
Chaysavanh Manichach Research Institute Hospital Vall d'Hebró (VHIR) Human core microbiota associated to health status
Eduardo Eyras Research Group on Biomedical Informatics GRIB (IMIM-UPF) Study of chromatin code for splicing regulation
Ferran Azorin Institute for Research in Biomedicine (IRB) Epigenetic regulation of chromatin functions
Gianni de Fabritiis Research Group on Biomedical Informatics GRIB (IMIM-UPF) Fragment-based drug design, a mixed computational and experimental approach
Jaime Rubio Modelling of Biological Systems and Drug Designa Research Group of UB Docking, Molecular Dynamics Simulation and Free Energy Studies of the Binding Mechanism of Inhibitors with B-Raf, c-Abl and p38 Kinases.
Jordi García-Ojalvo Dynamical Systems Biology Lab of UPF Unconventional computing in cellular networks
Jordi Villà-Freixa Escola Politècnica Superior de la UVIC Effect of nitrotyrosynation on the reactivity of triosephosphate isomerase
Jordi Villà-Freixa Escola Politècnica Superior de la UVIC Analysis and characterization of CD300f and their ligands
Lars Juhl Jensen Novo Nordisk Foundation Center for Protein Research Web interface of gene-tissue associations
Luis Pérez-Jurado Genetics Research Unit of UPF Evaluation of U12 (or minor) splicing efficiency in human cells (or samples) using RNAseq data
Mar Albà Research Group on Biomedical Informatics GRIB (IMIM-UPF) Identification of novel human genes using next generation sequencing techniques
Mayka Sánzhez Institute of Predictive and Personalized Medicine of Cancer Computational tools on iron metabolism: diagnostic and patients web, mutation analisis and discover of new genes
Nikolaus Rajewsky & Jordi Solana Max Delbrück Center For Molecular Medicine (Berlin) Computational analysis of planarian transcriptomic data
Patrick Aloy Institute for Research in Biomedicine (IRB) A network biology approach to chronic liver disease
Robert Castelo / Montserrat Milà Research Group on Biomedical Informatics GRIB (IMIM-UPF) Identifying key genes implicated in intellectual disability through whole-exome sequencing (WES)
Roderic Guigó Computational Biology of RNA Processing Group of CRG Trancriptome analysis in the Drosophila saltans species group
Santiago Ramón Spanish Nationa Cancer Research Centre Biocomputational analysis of human dihydroorotase and aspartate transcarbamylase: understanding conformational transitions and specificity in the active sites
Simon C. Heath Centre Nacional d'Anàlisi Genòmica (CNAG) Assessment of the performance of modern sequence mappers when applied to longer reads (>150bp)
Tanya Vavouri Institute of Predictive and Personalized Medicine of Cancer Aberrant transcription in cancer